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Forum Diffusion Toolkit Usage automatic creation of tracts

automatic creation of tracts
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UserPost

10:12 am
June 29, 2010


lamberton

France

New Member

posts 2
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1

Hi,

 

I'm wondering if there is  a way to automatically extract and save (in a .trk or .nii file) a specific tract based on one or more predefined masks (available in NIFTI format) and the results of a tractography such as with the FACT method.

I know how to do that manually in Trackvis, however, as I've a lot of subjects to process, I'm looking for an automatic method.

 

Thanks in advance for your help

 

Franck

12:42 pm
July 8, 2010


Ruopeng

Admin

posts 406
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2

Unfortunately that is not feasible in TrackVis. However, I'm planning to include my old command-line based track_vis program in the next release. It has an option to do that.

Ruopeng

5:30 am
July 31, 2010


lamberton

France

New Member

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3

Hi

I'm very interesting in this feature. Have you any ideas on the release ?

Maybe can you share this script as a beta version ?

 

Franck 

10:22 am
August 2, 2010


Ruopeng

Admin

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Hi Franck,

The command-line version was an old program intended initially for in-house use only and has not been updated for a while. I need to do a little patch-up to make sure it works with the latest data format and such. I hope to release it in a month or so.

Best,

Ruopeng

3:41 pm
September 13, 2011


pinghongyeh

Member

posts 5
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5

any update on the automated tract labeling? Thanks.

11:33 am
September 14, 2011


Ruopeng

Admin

posts 406
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6

What is your platform? Let me know and I will send you the command-line tool.

Ruopeng

2:18 pm
September 14, 2011


pinghongyeh

Member

posts 5
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7

Hi Ruopeng,

 

 I have both MAC OS 10.6 and 10.5. Thanks.

 

Ping

2:24 pm
September 14, 2011


Ruopeng

Admin

posts 406
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8

Just sent it via file drop.

Ruopeng

7:02 pm
October 3, 2011


minjie

New Member

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Hi Ruopeng,

 

I am interested in the binary for automatic tract creation as well. I would really appreciate if you could send me the command-line tool. I am using Mac 10.6.

 

Thanks,

Minjie

 

5:11 pm
October 5, 2011


Ruopeng

Admin

posts 406
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10

Just sent it via file drop.

Ruopeng
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