Sorry for my late reply.
A MD map is like a FA map but then it shows the Mean Diffusivity. This measure is often used besides the FA map.
From wikipedia:
Another commonly used measure that summarizes the total diffusivity is the Trace—which is the sum of the three eigenvalues,
- λ1 + λ2 + λ3.
If we divide this sum by three we have the mean diffusivity
- (λ1 + λ2 + λ3)/3.