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2:09 pm
June 3, 2010
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gabriel
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Dear Ruopeng,
First let me thank you for making just a fantastic package. I love how it all "just works" and is so well integrated.
I do have one request tough, would it be possible to add more command line options to Trackvis to automatically do some operations? What I have in mind is:
- Loading TRK file
- Load ROI (s) from Nifti (but even one is enough for a start)
- Filter fibers by ROI (maybe length too if possible)
- Save filtered fibers to a new TRK file
I know I can do this with some homemade Python or MATLAB scripts. Even the UCLA Multimodal connectivity package already does do this, but even they claim that the number of found fibers is only 95-99% similar to Trackvis. Also having the GUI quickly load up with the fibers up would be very good, to quickly check problem cases. Again it's all a question of having all the process well integrated.
I wonder if this functionality would be already be possible via the Network remote access option. Is the protocol for that documented somewhere? That would be amazing.
A great big thanks!
Gabriel
Newcastle University, UK
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12:48 pm
June 7, 2010
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Ruopeng
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| Admin
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Hi Gabriel,
Thanks for your kind feedbacks on TrackVis. The command-line options for TrackVis have been a struggle mainly due to the difficulty on Mac version (thanks to Apples app bundle and stuff). As more request coming, I'm thinking maybe I should just make it available in Linux and Windows versions. I'll definitely put that in my to-do list.
On another note, before this TrackVis program was born, I had actually written a command-line version of trackvis (with about 80 options!). I haven't put much new stuff in it since we moved to this new TrackVis project, but it is still usable (and being used with our inhouse batch processing projects). I've made the decision to include that command-line tool in the next release. So stay tuned…
Best,
Ruopeng
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3:09 am
July 3, 2011
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r.navarra
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Post edited 3:10 am – July 3, 2011 by r.navarra
Hi Ruopeng.
Is there any update about the command line?
Kind Regards,
Riccardo
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4:31 pm
July 11, 2011
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Ruopeng
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Sorry there has been delays on releasing of the new version. If you are really interested, I can send you a copy of the command-line tool.
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5:09 am
July 19, 2011
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doulie
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| Member | posts 3 |
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Hi Ruopeng,
I am very interested, could you send me a copy of the cammand-line tool ?
Kind Regards,
Adeline
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10:06 am
July 19, 2011
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doulie
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| Member | posts 3 |
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Or maybe Riccardo if you have, you could send it to me ?
Adeline
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12:45 pm
July 20, 2011
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Ruopeng
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3:34 pm
July 25, 2011
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palauwu
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| New Member | posts 1 |
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Hi Ruopeng,
Would it be possible for you to send me the command line tool as well? I would really appreciate the chance to use it.
Thanks!
Paula
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11:19 am
August 30, 2011
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pinghongyeh
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| Member | posts 5 |
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Hi Ruopeng,
May I have the command line tool as well? Thanks.
Ping
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2:34 pm
August 30, 2011
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Ruopeng
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OK. What is your email and also the platform you are running?
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10:46 am
August 31, 2011
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pinghongyeh
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| Member | posts 5 |
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Hi Ruopeng,
My email is pinghongyeh@gmail.com and I use MAC OS X 10.5 or 10.6. Thanks.
Ping
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12:48 pm
September 1, 2011
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Ruopeng
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3:16 pm
October 14, 2011
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alta
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| New Member | posts 1 |
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Dear Ruopeng:
Thank you very much for this fantastic tool.
Could I also have the commandline tool for Win32 and and Linux64?
Thanks a lot!
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12:20 pm
October 17, 2011
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Ruopeng
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2:05 pm
October 29, 2011
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leeson
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| New Member | posts 1 |
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Dear Ruopeng,
TrackVis is so cool! thanks for sharing. Coul you send me the commandline tool for Win32 and Linux64? My Email address is huyuzheng AT gmail.com. Many thanks :D
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11:21 am
December 4, 2011
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gaolion
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| Member | posts 7 |
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Dear Ruopeng,
First let me heartfully thank you for your great work on TrackVIS, and we do use it for data processing in a recent paper– Possible Retrogenesis Observed with Fiber Tracking: An Anteroposterior Pattern of White Matter Disintegrity in Normal Aging and Alzheimer’s Disease
While we did that mainly by hand. We may explore abit more on the data with TrackVIS, and I'd like to know a bit more on batch-process. As I see your new version does have batch-process function. Yet I could not find any hint–sorry that I am medical background and know little about matlab. Could you please give some suggestion / demonstration on the first steps of batch processing to us (gaolion@gmail.com).
Many Thanks!
Gao
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3:00 pm
December 5, 2011
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Ruopeng
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You can find some introduction here:
http://trackvis.org/dtk/?subsect=script
It does require some knowledge of command-line and shell scripting.
Ruopeng
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12:16 pm
January 17, 2012
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ainafp
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| New Member | posts 1 |
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Hi Ruopeng,
Could I have the command line tool? I'm using Windows.
Thanks!
Aina
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3:52 pm
January 17, 2012
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Ruopeng
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Post edited 3:53 pm – January 17, 2012 by Ruopeng
The command-line tool is included in the latest release.
http://trackvis.org/blog/2011/…..-released/
Ruopeng
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